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Hidden Fee Finder for eCommerce Stores: Check Your Merchant Statement

Online sales are almost all card-not-present, and those statements often stack gateway, processor, and network charges in different places. Tick what appears on last month's statement to see your real effective rate as an eCommerce store and which charges are worth a question.

Your statement

Step 1: Totals and pricing model
Pick the closest match. This sets the industry average used for comparison.
Usually labeled Total Sales, Gross Sales, or Amount Submitted on page one of your statement.
Usually labeled Total Fees, Fees Charged, or Total Discount. Include every fee section on the statement.
Usually labeled Items, Count, or Number of Transactions in the summary section.
Look for words like Qualified, Mid-Qualified, or Non-Qualified (tiered); Interchange or IC plus a markup (interchange-plus); or one percentage on every sale (flat rate).
Printed at the top of your statement. Used only to tailor your report.
Step 2: Tick the fees you see

Tick every fee name that appears on your statement. Amounts are optional; adding them builds your annual cost table.

Typically a card-brand pass-through paid to the bank that issued your customer's card.
Typically pass-through fees set by Visa, Mastercard, Discover, or Amex.
Processor-set. Charged when the processor's records show your annual PCI validation is not complete.
Processor-set charge for the processor's PCI program or tools.
Processor-set monthly charge for producing your statement.
Processor-set yearly charge, usually billed in a single month.
Processor-set. Billed when your fees fall below a minimum the processor set.
Processor-set charge each time you close out (settle) a batch of transactions.
Set by the processor or the gateway provider for online or virtual terminal processing.
Processor-set flat monthly charge.
Typically processor-set despite the name. Ask what it covers.
Processor-set extra rates on transactions moved out of the cheapest tier.
Processor-set charge per dispute or document request.
Often a separate lease contract, sometimes with a third-party leasing company.
Not a monthly line. Tick if your agreement charges you to cancel before the term ends.

Nothing is uploaded. You type a few totals and tick fee names.

Estimates are based on published industry averages and are not a quote. Actual rates depend on card mix, ticket size, industry, and underwriting.

Your statement check

Enter your statement totals and tick the fees you see. Your effective rate and fee-by-fee breakdown appear here.

How this works: the assumptions behind your numbers

Every number above comes from the totals you enter plus the assumptions below. Assumptions are estimates, not verified rates.

Estimates are based on published industry averages and are not a quote. Actual rates depend on card mix, ticket size, industry, and underwriting.

Why eCommerce store statements are harder to read

Nearly every sale an online store makes is card-not-present. Card-not-present transactions generally carry higher interchange than tapped or dipped cards, so an eCommerce store's effective rate will usually sit above a retail shop's even when nothing is wrong. That is why this page compares you to the eCommerce assumption in our pricing file (3.15%, labeled an assumption) and not to a general average.

The second complication is that fees often come from more than one place. Your payment gateway may bill a monthly fee and a per-transaction fee, your processor may add its own gateway or 'internet access' line, and your cart platform may charge separately. When you enter total fees, include every section of the processor statement plus any separate gateway invoice for the same month, or your effective rate will look better than it really is.

Cross-border and international card fees, address verification fees, and network fees on card-on-file transactions usually show up inside the card brand or network section. Tick 'Card brand / network fees' if you see them, and enter that section's total if your statement shows one.

Worked example: a hypothetical eCommerce store

These numbers are made up to show how the tool reads a statement. Say a store selling skincare online processed $40,000 in card sales last month across 800 orders and paid $1,380 in total fees. Effective rate: $1,380 / $40,000 = 3.45%. Cost per transaction: $1.73. Average ticket: $50.00. Compared with the 3.15% eCommerce assumption, that is 0.30 percentage points higher, which the tool labels 'Above the industry average.' Across a year, that gap works out to roughly $1,440 above the assumed average.

The store ticks interchange, card brand fees, gateway fee, PCI non-compliance, a monthly service fee, and chargeback fees. Three of those are typically processor-set, plus the gateway fee, so the tool flags four charges worth a question. If the owner also enters $820 for interchange and $90 for card brand fees, the full breakdown estimates $470 a month as markup, about 1.18% of volume and about 34% of total fees.

Estimates are based on published industry averages and are not a quote. Actual rates depend on card mix, ticket size, industry, and underwriting.

Fees eCommerce stores should look at first

Gateway fees: check whether you are paying for a gateway twice, once to the gateway provider and again as a processor line item. Also check the per-transaction gateway charge, because on small orders it can matter as much as the percentage rate.

PCI non-compliance fees: using a hosted checkout reduces your PCI scope, but most processors still expect an annual self-assessment questionnaire. If you see a monthly non-compliance fee, the fix is often completing that questionnaire, not changing anything on your site.

Chargeback and retrieval fees: online stores face more 'item not received' and 'I didn't authorize this' disputes than in-person businesses. Tick these even if they were small last month, since one bad month after a promotion can change the picture. Also look at refunds: practices vary on whether a per-transaction fee is charged on a refund and whether any original fees come back, so ask your processor how they handle it.

Non-qualified or mid-qualified surcharges: on tiered pricing, keyed or online transactions and rewards cards are common reasons sales get pushed into higher buckets. If you are on tiered pricing and your rate is above average, that is the first place to ask questions.

What a good result looks like for an eCommerce store

There is no single right number. A store with a $20 average ticket will show a higher effective rate than a store with a $200 ticket, because fixed per-transaction fees (processor, gateway, network) take a bigger bite out of small orders. Look at cost per transaction alongside the effective rate before drawing conclusions.

A healthy result usually looks like this: an effective rate close to or below the eCommerce assumption for your ticket size, few or no processor-set fees beyond what your contract lists, no PCI non-compliance fee, and, if you are on interchange-plus, markup lines that match your agreement. If the tool shows you above average with several processor-set fees, use the questions in the full breakdown with your current processor, run the Processing Fee Savings Calculator, or talk to a payments specialist.

Frequently asked questions

Should I check my holiday-season statement or a normal month?

Use a typical month if you can. In a big Q4 month, fixed monthly fees get spread over more volume, so your effective rate can look lower than usual, and the annualized figures in the full breakdown assume last month is representative. A very slow month does the opposite. If your business is highly seasonal, run the tool twice, once for a peak month and once for a quiet one, making sure volume and fees come from the same month each time.

My gateway bills me separately from my processor. Do I add both to total fees?

Yes. Add the gateway invoice for the same month to the processor statement total so your effective rate reflects what card acceptance actually costs you. Then tick 'Gateway fee' and enter the gateway total. If the processor statement also shows its own gateway line, note that too, because paying for gateway access in two places is worth asking about.

I run subscriptions. Why is my rate different on recurring orders?

Recurring card-on-file charges are card-not-present like your other online orders, but you may also see extra items such as card updater fees or network fees tied to stored credentials, plus fees on declined retry attempts. Those usually appear in the card brand section or as gateway charges. Tick them where they fit and ask your processor which recurring-billing fees are network costs and which are their own charges.

Do refunds and returns affect the numbers I enter?

Enter card volume and transaction count the same way your statement reports them, and stay consistent. If your statement shows gross sales and refunds separately, use gross sales for volume and count refunds only if the statement counts them as transactions. Ask your processor whether refunds carry a per-transaction fee, since practices vary and a store with a high return rate can feel that cost.

Why is my effective rate higher than a friend's coffee shop or boutique?

Their customers mostly tap or insert cards in person, which generally carries lower interchange than online sales, and their risk profile is different. That is why this tool compares eCommerce stores to the eCommerce assumption of 3.15% rather than the retail or restaurant figure. A higher number than an in-person shop is expected; a number well above other online stores with similar ticket sizes is what deserves a closer look.

Put this calculator on your website

Accountants, bookkeepers, POS resellers, and industry associations can embed this free statement checker with one line of code. Your clients can find their effective rate and see which fees deserve a question without leaving your site. It stays up to date automatically.